Identification and functional prediction of circRNAs in Populus Euphratica Oliv. heteromorphic leaves.
Identifieur interne : 000337 ( Main/Exploration ); précédent : 000336; suivant : 000338Identification and functional prediction of circRNAs in Populus Euphratica Oliv. heteromorphic leaves.
Auteurs : Cailin Li [République populaire de Chine] ; Shaowei Qin [République populaire de Chine] ; Lianghong Bao [République populaire de Chine] ; Zhongzhong Guo [République populaire de Chine] ; Lifeng Zhao [République populaire de Chine]Source :
- Genomics [ 1089-8646 ] ; 2020.
Descripteurs français
- KwdFr :
- ARN messager (métabolisme), Analyse de profil d'expression de gènes (MeSH), Analyse de séquence d'ARN (MeSH), Feuilles de plante (croissance et développement), Feuilles de plante (génétique), Feuilles de plante (métabolisme), Morphogenèse (génétique), Populus (croissance et développement), Populus (génétique), Populus (métabolisme), microARN (métabolisme).
- MESH :
- croissance et développement : Feuilles de plante, Populus.
- génétique : Feuilles de plante, Morphogenèse, Populus.
- métabolisme : ARN messager, Feuilles de plante, Populus, microARN.
- Analyse de profil d'expression de gènes, Analyse de séquence d'ARN.
English descriptors
- KwdEn :
- Gene Expression Profiling (MeSH), MicroRNAs (metabolism), Morphogenesis (genetics), Plant Leaves (genetics), Plant Leaves (growth & development), Plant Leaves (metabolism), Populus (genetics), Populus (growth & development), Populus (metabolism), RNA, Circular (metabolism), RNA, Messenger (metabolism), Sequence Analysis, RNA (MeSH).
- MESH :
- chemical , metabolism : MicroRNAs, RNA, Circular, RNA, Messenger.
- genetics : Morphogenesis, Plant Leaves, Populus.
- growth & development : Plant Leaves, Populus.
- metabolism : Plant Leaves, Populus.
- Gene Expression Profiling, Sequence Analysis, RNA.
Abstract
Populus euphratica Oliv. has typical heterophylly. Linear, lanceolate, ovate and broad-ovate leaves appeared in turn from sprouting to development, to maturity. The environmental adaptabilities of P. euphraticas with different leaves were also different. To explore the role of circRNAs on the morphogenesis of P. euphratica heteromorphic leaves (P.hl) and their stress response, the expression profile of circRNAs was analyzed by strand-specific RNA sequencing for the above four kinds of heteromorphic leaves. According to ceRNA hypothesis, 18 differentially expressed cirRNAs (DECs) could influence the expression of 84 mRNAs by antagonizing 23 miRNAs in five sample-pairs. Based on the function of 84 mRNAs, these DECs participate in development process, response to stimulus, response to hormonal et al. Therefore, these circRNAs were involved in the P.hl morphogenesis and stress response by interacting with miRNAs and mRNAs. Our study complemented the genebank of P. euphratica and provided a new strategy for studying leaf development.
DOI: 10.1016/j.ygeno.2019.01.013
PubMed: 30707937
Affiliations:
Links toward previous steps (curation, corpus...)
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Electronic address: lifengz2011@126.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life Sciences, Tarim University, Alar 843300, China; Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, Tarim University, Alar 843300</wicri:regionArea><wicri:noRegion>Alar 843300</wicri:noRegion></affiliation></author></analytic><series><title level="j">Genomics</title><idno type="eISSN">1089-8646</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Gene Expression Profiling (MeSH)</term><term>MicroRNAs (metabolism)</term><term>Morphogenesis (genetics)</term><term>Plant Leaves (genetics)</term><term>Plant Leaves (growth & development)</term><term>Plant Leaves (metabolism)</term><term>Populus (genetics)</term><term>Populus (growth & development)</term><term>Populus (metabolism)</term><term>RNA, Circular (metabolism)</term><term>RNA, Messenger (metabolism)</term><term>Sequence Analysis, RNA (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN messager (métabolisme)</term><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Analyse de séquence d'ARN (MeSH)</term><term>Feuilles de plante (croissance et développement)</term><term>Feuilles de plante (génétique)</term><term>Feuilles de plante (métabolisme)</term><term>Morphogenèse (génétique)</term><term>Populus (croissance et développement)</term><term>Populus (génétique)</term><term>Populus (métabolisme)</term><term>microARN (métabolisme)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>MicroRNAs</term><term>RNA, Circular</term><term>RNA, Messenger</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Feuilles de plante</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Morphogenesis</term><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Feuilles de plante</term><term>Morphogenèse</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ARN messager</term><term>Feuilles de plante</term><term>Populus</term><term>microARN</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Sequence Analysis, RNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Analyse de séquence d'ARN</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Populus euphratica Oliv. has typical heterophylly. Linear, lanceolate, ovate and broad-ovate leaves appeared in turn from sprouting to development, to maturity. The environmental adaptabilities of P. euphraticas with different leaves were also different. To explore the role of circRNAs on the morphogenesis of P. euphratica heteromorphic leaves (P.hl) and their stress response, the expression profile of circRNAs was analyzed by strand-specific RNA sequencing for the above four kinds of heteromorphic leaves. According to ceRNA hypothesis, 18 differentially expressed cirRNAs (DECs) could influence the expression of 84 mRNAs by antagonizing 23 miRNAs in five sample-pairs. Based on the function of 84 mRNAs, these DECs participate in development process, response to stimulus, response to hormonal et al. Therefore, these circRNAs were involved in the P.hl morphogenesis and stress response by interacting with miRNAs and mRNAs. Our study complemented the genebank of P. euphratica and provided a new strategy for studying leaf development.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30707937</PMID><DateCompleted><Year>2020</Year><Month>07</Month><Day>27</Day></DateCompleted><DateRevised><Year>2020</Year><Month>07</Month><Day>27</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1089-8646</ISSN><JournalIssue CitedMedium="Internet"><Volume>112</Volume><Issue>1</Issue><PubDate><Year>2020</Year><Month>01</Month></PubDate></JournalIssue><Title>Genomics</Title><ISOAbbreviation>Genomics</ISOAbbreviation></Journal><ArticleTitle>Identification and functional prediction of circRNAs in Populus Euphratica Oliv. heteromorphic leaves.</ArticleTitle><Pagination><MedlinePgn>92-98</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0888-7543(18)30558-5</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.ygeno.2019.01.013</ELocationID><Abstract><AbstractText>Populus euphratica Oliv. has typical heterophylly. Linear, lanceolate, ovate and broad-ovate leaves appeared in turn from sprouting to development, to maturity. The environmental adaptabilities of P. euphraticas with different leaves were also different. To explore the role of circRNAs on the morphogenesis of P. euphratica heteromorphic leaves (P.hl) and their stress response, the expression profile of circRNAs was analyzed by strand-specific RNA sequencing for the above four kinds of heteromorphic leaves. According to ceRNA hypothesis, 18 differentially expressed cirRNAs (DECs) could influence the expression of 84 mRNAs by antagonizing 23 miRNAs in five sample-pairs. Based on the function of 84 mRNAs, these DECs participate in development process, response to stimulus, response to hormonal et al. Therefore, these circRNAs were involved in the P.hl morphogenesis and stress response by interacting with miRNAs and mRNAs. Our study complemented the genebank of P. euphratica and provided a new strategy for studying leaf development.</AbstractText><CopyrightInformation>Copyright © 2019 Elsevier Inc. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Cailin</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Tarim University, Alar 843300, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Qin</LastName><ForeName>Shaowei</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Tarim University, Alar 843300, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bao</LastName><ForeName>Lianghong</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Tarim University, Alar 843300, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Zhongzhong</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Tarim University, Alar 843300, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Lifeng</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Tarim University, Alar 843300, China; Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, Tarim University, Alar 843300, China. Electronic address: lifengz2011@126.com.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>01</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Genomics</MedlineTA><NlmUniqueID>8800135</NlmUniqueID><ISSNLinking>0888-7543</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D035683">MicroRNAs</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000079962">RNA, Circular</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012333">RNA, Messenger</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D035683" MajorTopicYN="N">MicroRNAs</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009024" MajorTopicYN="N">Morphogenesis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000079962" MajorTopicYN="N">RNA, Circular</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012333" MajorTopicYN="N">RNA, Messenger</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017423" MajorTopicYN="N">Sequence Analysis, RNA</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">CircRNAs</Keyword><Keyword MajorTopicYN="Y">Functional prediction</Keyword><Keyword MajorTopicYN="Y">Identification</Keyword><Keyword MajorTopicYN="Y">Leaf morphogenesis</Keyword><Keyword MajorTopicYN="Y">Populus euphratica Oliv.</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>09</Month><Day>29</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2018</Year><Month>12</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>01</Month><Day>20</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>2</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>7</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>2</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30707937</ArticleId><ArticleId IdType="pii">S0888-7543(18)30558-5</ArticleId><ArticleId IdType="doi">10.1016/j.ygeno.2019.01.013</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Cailin" sort="Li, Cailin" uniqKey="Li C" first="Cailin" last="Li">Cailin Li</name></noRegion><name sortKey="Bao, Lianghong" sort="Bao, Lianghong" uniqKey="Bao L" first="Lianghong" last="Bao">Lianghong Bao</name><name sortKey="Guo, Zhongzhong" sort="Guo, Zhongzhong" uniqKey="Guo Z" first="Zhongzhong" last="Guo">Zhongzhong Guo</name><name sortKey="Qin, Shaowei" sort="Qin, Shaowei" uniqKey="Qin S" first="Shaowei" last="Qin">Shaowei Qin</name><name sortKey="Zhao, Lifeng" sort="Zhao, Lifeng" uniqKey="Zhao L" first="Lifeng" last="Zhao">Lifeng Zhao</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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